albafsanles/cellcount:latest
$ singularity pull shub://albafsanles/cellcount:latest
Singularity Recipe
Bootstrap: docker
From: ubuntu:latest
%post
apt-get update && apt-get install -y libcurl4-gnutls-dev libxml2-dev libssl-dev libmariadb-client-lgpl-dev ibglib2.0-dev libcairo2-dev ghostscript
apt-get update && apt-get -y install r-base
apt-get update && apt-get install -y libxt-dev
Rscript -e 'install.packages("devtools", dependencies = TRUE)'
Rscript -e 'library(devtools); install_github("brentp/celltypes450")'
Rscript -e 'source("https://bioconductor.org/biocLite.R"); biocLite("sva")'
Rscript -e 'source("https://bioconductor.org/biocLite.R"); biocLite(pkgs=c("minfi","FlowSorted.Blood.450k"))'
Rscript -e 'source("https://bioconductor.org/biocLite.R"); biocLite(pkgs=c("DEXSeq","impute","wateRmelon","methylumi"))'
Rscript -e 'install.packages(c("gam","Hmisc","devtools","MASS","lmtest","markdown","Cairo","knitr","doParallel","compareGroups","MatrixEQTL","plyr","dplyr","matrixStats","sandwich","ggplot2","glmnet","parallel"))'
Rscript -e 'install.packages("devtools", dependencies = TRUE)'
Rscript -e 'library(devtools); install_github("brentp/celltypes450")'
Rscript -e 'source("https://bioconductor.org/biocLite.R"); biocLite("sva")'
Rscript -e 'source("https://bioconductor.org/biocLite.R"); biocLite(pkgs=c("minfi","FlowSorted.Blood.450k","IlluminaHumanMethylation450kmanifest"))'
Rscript -e 'source("https://bioconductor.org/biocLite.R"); biocLite(pkgs=c("DEXSeq","impute","wateRmelon","methylumi"))'
Rscript -e 'install.packages(c("gam","Hmisc","devtools","MASS","lmtest","markdown","Cairo","knitr","doParallel","compareGroups","MatrixEQTL","plyr","dplyr","matrixStats","sandwich","ggplot2","glmnet","parallel"))'
Collection
- Name: albafsanles/cellcount
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/albafsanles-cellcount-latest |
collection name | albafsanles/cellcount |
branch | master |
tag | latest |
commit | 4300918f6d05a552bba48e8e1cd6b7e34f61f6ca |
version (container hash) | 13be1ded90c9db3c3df6e49d828c1eed |
build date | 2019-02-25T20:22:55.882Z |
size (MB) | 2374 |
size (bytes) | 1218945055 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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