albafsanles/cellcount:latest

$ singularity pull shub://albafsanles/cellcount:latest

Singularity Recipe

Bootstrap: docker
From: ubuntu:latest


%post

apt-get update && apt-get install -y libcurl4-gnutls-dev libxml2-dev libssl-dev libmariadb-client-lgpl-dev ibglib2.0-dev libcairo2-dev ghostscript 
apt-get update && apt-get -y install r-base
apt-get update && apt-get install -y libxt-dev 

Rscript -e 'install.packages("devtools", dependencies = TRUE)'
Rscript -e 'library(devtools); install_github("brentp/celltypes450")'   
Rscript -e 'source("https://bioconductor.org/biocLite.R"); biocLite("sva")'
Rscript -e 'source("https://bioconductor.org/biocLite.R"); biocLite(pkgs=c("minfi","FlowSorted.Blood.450k"))'
Rscript -e 'source("https://bioconductor.org/biocLite.R"); biocLite(pkgs=c("DEXSeq","impute","wateRmelon","methylumi"))'
Rscript -e 'install.packages(c("gam","Hmisc","devtools","MASS","lmtest","markdown","Cairo","knitr","doParallel","compareGroups","MatrixEQTL","plyr","dplyr","matrixStats","sandwich","ggplot2","glmnet","parallel"))'
Rscript -e 'install.packages("devtools", dependencies = TRUE)'
Rscript -e 'library(devtools); install_github("brentp/celltypes450")'   
Rscript -e 'source("https://bioconductor.org/biocLite.R"); biocLite("sva")'
Rscript -e 'source("https://bioconductor.org/biocLite.R"); biocLite(pkgs=c("minfi","FlowSorted.Blood.450k","IlluminaHumanMethylation450kmanifest"))'
Rscript -e 'source("https://bioconductor.org/biocLite.R"); biocLite(pkgs=c("DEXSeq","impute","wateRmelon","methylumi"))'
Rscript -e 'install.packages(c("gam","Hmisc","devtools","MASS","lmtest","markdown","Cairo","knitr","doParallel","compareGroups","MatrixEQTL","plyr","dplyr","matrixStats","sandwich","ggplot2","glmnet","parallel"))'

Collection


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Metrics

key value
id /containers/albafsanles-cellcount-latest
collection name albafsanles/cellcount
branch master
tag latest
commit 4300918f6d05a552bba48e8e1cd6b7e34f61f6ca
version (container hash) 13be1ded90c9db3c3df6e49d828c1eed
build date 2019-02-25T20:22:55.882Z
size (MB) 2374
size (bytes) 1218945055
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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