alaindomissy/rnashapes:tag2

$ singularity pull shub://alaindomissy/rnashapes:tag2

Singularity Recipe

BootStrap: docker
From:ubuntu:14.04

# this would include the CMD line from the dockerfile
# ( here: CMD [ "/bin/bash" ] ) as the %runscript
# IncludeCmd: yes


###############################################################################
%setup
  # this is run from outside the container to start setting it up

  echo "Looking in directory '$SINGULARITY_ROOTFS' for /bin/sh"
  if [ ! -x "$SINGULARITY_ROOTFS/bin/sh" ]; then
      echo "Hrmm, this container does not have /bin/sh installed..."
      exit 1
  fi

  mkdir -p $SINGULARITY_ROOTFS/oasis/tscc/scratch
  mkdir -p $SINGULARITY_ROOTFS/projects/ps-yeolab
  mkdir -p $SINGULARITY_ROOTFS/projects/ps-yeolab3
  mkdir -p $SINGULARITY_ROOTFS/projects/ps-scrm


###############################################################################
%files


###############################################################################
%post
  # this is run inside the container to install all necessary packages

  apt-get install -y software-properties-common
  add-apt-repository -y ppa:bibi-help/bibitools
  apt-get -y update
  apt-get -y install rnashapes
  ln -s /usr/bin/RNAshapes /usr/bin/rnashapes


###############################################################################
%labels

MAINTAINER adomissy@ucsd.edu
VERSION 0.0.1
BUILD_DATE 20170718

###############################################################################
%environment

  #PATH=/opt/conda/bin:/usr/local/bin:/usr/bin:/bin
  PATH="/opt/conda/bin:$PATH"
  PATH="/usr/bin/rnashapes:$PATH"
  export PATH


###############################################################################
%runscript
  # this will get copied to /.singularity.d/runscript indide the container
  # which will run whenever the container is called as an executable

  PS1="$SINGULARITY_CONTAINER":"$PS1"
  /usr/bin/rnashapes $@
  PS1=$PREVIOUSPS1
  

###############################################################################
%test
  # this will be run once upon completion of container building
  #
  #/opt/test.sh
  #

Collection


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Metrics

key value
id /containers/alaindomissy-rnashapes-tag2
collection name alaindomissy/rnashapes
branch master
tag tag2
commit 7d3779fdddf4b0cc6faad8856efb7b2bf1c20f4b
version (container hash) 99015bf9589651b2bcff1d040caa7e73
build date 2017-10-15T18:24:56.188Z
size (MB) 476
size (bytes) 131485727
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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