aces/cbrain-containers-recipes:fsl_v6.0.1

$ singularity pull shub://aces/cbrain-containers-recipes:fsl_v6.0.1

Singularity Recipe

Bootstrap: docker
From: ubuntu:xenial-20190610  

############################################################
#                                                          #
# MCIN (McGill Centre for Integrative Neuroscience)        #
#                                                          #
# Singularity recipe for FSL 6.0.1 to build a container    #
# used in CBRAIN (https://github.com/aces/cbrain)          #
#                                                          #
############################################################
%labels
  Maintainer Shawn Brown 

%help
This container executes any fsl-core 6.0.1 command, and it contain all the fsl data too. 
For more information see FSL website: https://fsl.fmrib.ox.ac.uk/fsl/fslwiki

%post
  apt-get update
  apt-get install -y python wget curl file build-essential tcl libpng12-dev libmng-dev bzip2 sudo perl
  curl -O https://fsl.fmrib.ox.ac.uk/fsldownloads/fslinstaller.py 
  chmod 755 fslinstaller.py 
  su -c "python ./fslinstaller.py -D -E -d /usr/local/fsl --fslversion 6.0.1"
  mkdir /validation-data
  cd /validation-data
  wget https://fsl.fmrib.ox.ac.uk/fslcourse/downloads/preCourse.tar.gz
  tar -xvzf preCourse.tar.gz
 
%environment
  export FSLDIR=/usr/local/fsl
  export FSLOUTPUTTYPE=NIFTI_GZ
  export PATH=/usr/local/fsl/bin:$PATH
  export FSLMULTIFILEQUIT=TRUE
  export POSSUMDIR=/usr/local/fsl
  export LD_LIBRARY_PATH=/usr/local/fsl/lib:$LD_LIBRARY_PATH

Collection

• Name: aces/cbrain-containers-recipes
• License: GNU General Public License v3.0

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