ZhifangYe/mindboggle_build:latest

$ singularity pull shub://ZhifangYe/mindboggle_build:latest

Singularity Recipe

# mindboggle

BootStrap: docker
From: nipy/mindboggle:latest

%labels
Author zhifang.ye.fghm@gmail.com
Build-date 10/02/2018
Vendor Ubuntu:Xenial
Version 1.3.0

%runscript
    #!/bin/bash
    source activate mb
    exec mindboggle "$@"

%environment
    export FSL_DIR=/opt/fsl \
           OS=Linux \
           FS_OVERRIDE=0 \
           FIX_VERTEX_AREA= \
           FSF_OUTPUT_FORMAT=nii.gz
    export SUBJECTS_DIR=${FREESURFER_HOME}/subjects \
           FUNCTIONALS_DIR=${FREESURFER_HOME}/sessions \
           MNI_DIR=${FREESURFER_HOME}/mni \
           LOCAL_DIR=${FREESURFER_HOME}/local \
           FSFAST_HOME=${FREESURFER_HOME}/fsfast \
           MINC_BIN_DIR=${FREESURFER_HOME}/mni/bin \
           MINC_LIB_DIR=${FREESURFER_HOME}/mni/lib \
           MNI_DATAPATH=${FREESURFER_HOME}/mni/data \
           FMRI_ANALYSIS_DIR=${FREESURFER_HOME}/fsfast
    export PERL5LIB=${MINC_LIB_DIR}/perl5/5.8.5 \
           MNI_PERL5LIB=${MINC_LIB_DIR}/perl5/5.8.5
    export PATH=${FREESURFER_HOME}/bin:${FSFAST_HOME}/bin:${FREESURFER_HOME}/tktools:${MINC_BIN_DIR}:${PATH}

%post
    #------------------------------------------------------------------------------
    # Change timezone to Shanghai
    #------------------------------------------------------------------------------
    ln -fs /usr/share/zoneinfo/Asia/Shanghai /etc/localtime
    dpkg-reconfigure --frontend noninteractive tzdata
    #------------------------------------------------------------------------------
    # Create local binding point for our HPC
    #------------------------------------------------------------------------------
    mkdir /seastor
    mkdir /brain
    mkdir /lustre

Collection


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Metrics

key value
id /containers/ZhifangYe-mindboggle_build-latest
collection name ZhifangYe/mindboggle_build
branch master
tag latest
commit 1fee4614b8c3c05d47db8df9cc812d52e6c88d6f
version (container hash) 14b15141384be7d98f10adcabe5381a5
build date 2018-10-03T06:31:02.437Z
size (MB) 5212
size (bytes) 1723727903
SIF Download URL (please use pull with shub://)
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