TomHarrop/variant-utils:vcftools_0.1.16

$ singularity pull shub://TomHarrop/variant-utils:vcftools_0.1.16

Singularity Recipe

Bootstrap: docker
From: alpine:3.9

%help
    Container for vcftools 0.1.16

%labels
    VERSION "vcftools 0.1.16"

%post
    # packages
    apk add --update \
        bash \
        build-base \
        gcc \
        git \
        perl \
        wget \
        zlib-dev

    # download vcftools
    mkdir vcftools
    wget \
        -O "vcftools.tar.gz" \
        --no-check-certificate \
        https://github.com/vcftools/vcftools/releases/download/v0.1.16/vcftools-0.1.16.tar.gz
    tar -zxf vcftools.tar.gz \
        -C vcftools \
        --strip-components 2

    cd vcftools || exit 1
    ./configure
    make 
    make install
    cd .. || exit 1
    rm -rf vcftools vcftools.tar.gz

%runscript
    exec /usr/local/bin/vcftools "$@"

Collection


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Metrics

key value
id /containers/TomHarrop-variant-utils-vcftools_0.1.16
collection name TomHarrop/variant-utils
branch master
tag vcftools_0.1.16
commit d64cc5a37951760be575c43024c66e69b2563166
version (container hash) c270d19a922fbb2174b7bfa9dcb772486be675fcf2e703e49c9ea261c1e54aa5
build date 2021-03-04T00:21:39.054Z
size (MB) 78.953125
size (bytes) 82788352
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
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