TomHarrop/variant-utils:transindel_7098bd6
$ singularity pull shub://TomHarrop/variant-utils:transindel_7098bd6
Singularity Recipe
Bootstrap: docker
From: python:2.7.17-buster
%help
transIndel 7098bd6
https://github.com/cauyrd/transIndel
%labels
MAINTAINER "Tom Harrop"
VERSION "transIndel 7098bd6"
%post
# install samtools
apt-get update
apt-get install -y samtools
# install python2 dependencies
/usr/local/bin/pip install \
pysam==0.15.3 \
numpy==1.16.5
/usr/local/bin/pip install \
HTSeq==0.11.2
# install transindel
git clone git://github.com/cauyrd/transIndel.git
cd transIndel || exit 1
git checkout -f 7098bd6
# change to python 2.17.7
sed -i 's/#!\/usr\/bin\/python/#!\/usr\/local\/bin\/python/' \
*.py
chmod 755 *.py
%environment
export PATH="${PATH}:/transIndel"
%runscript
exec /transIndel/transIndel_build_DNA.py "$@"
Collection
- Name: TomHarrop/variant-utils
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/TomHarrop-variant-utils-transindel_7098bd6 |
collection name | TomHarrop/variant-utils |
branch | master |
tag | transindel_7098bd6 |
commit | b5e6f92659d4e4d90bb33613f6b1bcd6a942cbe4 |
version (container hash) | a0aa985746dfe810fb9af6f9740f0e7811b680458b9a2e1ed4c5fb1cec170ff4 |
build date | 2019-12-16T21:58:12.908Z |
size (MB) | 447.29296875 |
size (bytes) | 469020672 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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