TomHarrop/singularity-containers:vcftools_0.1.16

$ singularity pull shub://TomHarrop/singularity-containers:vcftools_0.1.16

Singularity Recipe

Bootstrap: docker
From: alpine:3.9

%help
    Container for vcftools 0.1.16

%labels
    VERSION "vcftools 0.1.16"

%post
    # packages
    apk add --update \
        bash \
        build-base \
        gcc \
        git \
        perl \
        wget \
        zlib-dev

    # download vcftools
    mkdir vcftools
    wget \
        -O "vcftools.tar.gz" \
        --no-check-certificate \
        https://github.com/vcftools/vcftools/releases/download/v0.1.16/vcftools-0.1.16.tar.gz
    tar -zxf vcftools.tar.gz \
        -C vcftools \
        --strip-components 2

    cd vcftools || exit 1
    ./configure
    make 
    make install
    cd .. || exit 1
    rm -rf vcftools vcftools.tar.gz

%runscript
    exec /usr/local/bin/vcftools "$@"

Collection


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Metrics

key value
id /containers/TomHarrop-singularity-containers-vcftools_0.1.16
collection name TomHarrop/singularity-containers
branch master
tag vcftools_0.1.16
commit 6ec2aff7b2f7df278991c177d6061b1857982f4b
version (container hash) b7e92cd92d7477a523e9241e2d4281f3
build date 2021-03-04T19:04:17.720Z
size (MB) 253
size (bytes) 82649119
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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