TomHarrop/singularity-containers:trinity_2.8.3

$ singularity pull shub://TomHarrop/singularity-containers:trinity_2.8.3

Singularity Recipe

Bootstrap: docker
From: trinityrnaseq/trinityrnaseq:2.8.3

%help

    Container for Trinity 2.8.3
    https://github.com/trinityrnaseq/trinityrnaseq/releases

%labels

    VERSION "Trinity 2.8.3"

%post
    
    apt-get update \
        && apt-get install -y \
        language-pack-en

    # install RSEM
    mkdir rsem-install
    wget -O "rsem.tar.gz" \
        https://github.com/deweylab/RSEM/archive/v1.3.0.tar.gz
    tar -zxf rsem.tar.gz \
        -C rsem-install \
        --strip-components 1
    cd rsem-install
    make && make install
    cd ..
    rm -rf rsem.tar.gz rsem-install

%environment

    PATH="${PATH}:/usr/local/bin/trinityrnaseq/util:/usr/local/bin/trinityrnaseq/util/support_scripts:/usr/local/bin/trinityrnaseq/util/misc"

%runscript

    exec /usr/local/bin/trinityrnaseq/Trinity "$@"

Collection


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Metrics

key value
id /containers/TomHarrop-singularity-containers-trinity_2.8.3
collection name TomHarrop/singularity-containers
branch master
tag trinity_2.8.3
commit 8c0f53404dc7a88dfd156e6d468d861156fb6e5a
version (container hash) b96521a7980ab68a2e75759d0c65db36
build date 2018-08-24T05:04:45.715Z
size (MB) 4735
size (bytes) 1870774303
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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