TomHarrop/singularity-containers:trinity_2.8.0

$ singularity pull shub://TomHarrop/singularity-containers:trinity_2.8.0

Singularity Recipe

Bootstrap: docker
From: trinityrnaseq/trinityrnaseq:2.8.0

%help

    Container for Trinity 2.8.0
    https://github.com/trinityrnaseq/trinityrnaseq/releases

%labels

    VERSION "Trinity 2.8.0"

%post
    
    apt-get update \
        && apt-get install -y \
        language-pack-en

    # install RSEM
    mkdir rsem-install
    wget -O "rsem.tar.gz" \
        https://github.com/deweylab/RSEM/archive/v1.3.0.tar.gz
    tar -zxf rsem.tar.gz \
        -C rsem-install \
        --strip-components 1
    cd rsem-install
    make && make install
    cd ..
    rm -rf rsem.tar.gz rsem-install

%environment

    PATH="${PATH}:/usr/local/bin/trinityrnaseq/util:/usr/local/bin/trinityrnaseq/util/support_scripts:/usr/local/bin/trinityrnaseq/util/misc"

%runscript

    exec /usr/local/bin/trinityrnaseq/Trinity "$@"

Collection


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Metrics

key value
id /containers/TomHarrop-singularity-containers-trinity_2.8.0
collection name TomHarrop/singularity-containers
branch master
tag trinity_2.8.0
commit b9be7c14955f537fe4e83369442f353e9bb3df09
version (container hash) fb561f4c0dd192183da8c51ce8183ac7
build date 2018-08-15T09:33:41.713Z
size (MB) 4737
size (bytes) 1871069215
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
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