TomHarrop/singularity-containers:trinity_2.6.6

$ singularity pull shub://TomHarrop/singularity-containers:trinity_2.6.6

Singularity Recipe

Bootstrap: docker
From: trinityrnaseq/trinityrnaseq:2.6.6

%help

    Container for Trinity 2.6.6
    https://github.com/trinityrnaseq/trinityrnaseq/releases

%labels

    VERSION "Trinity 2.6.6"

%post
    
    apt-get update \
        && apt-get install -y \
        language-pack-en

    # install RSEM
    mkdir rsem-install
    wget -O "rsem.tar.gz" \
        https://github.com/deweylab/RSEM/archive/v1.3.0.tar.gz
    tar -zxf rsem.tar.gz \
        -C rsem-install \
        --strip-components 1
    cd rsem-install
    make && make install
    cd ..
    rm -rf rsem.tar.gz rsem-install

%environment

    PATH="${PATH}:/usr/local/bin/trinityrnaseq/util:/usr/local/bin/trinityrnaseq/util/support_scripts"

%runscript

    exec /usr/local/bin/trinityrnaseq/Trinity "$@"

Collection


View on Datalad

Metrics

key value
id /containers/TomHarrop-singularity-containers-trinity_2.6.6
collection name TomHarrop/singularity-containers
branch master
tag trinity_2.6.6
commit a17b60edb0e864b80b41b33d78d624a6091227fc
version (container hash) 07006200b0c0ca0d2de9b8327a047963
build date 2018-05-29T12:58:47.600Z
size (MB) 4785
size (bytes) 1900548127
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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