TomHarrop/singularity-containers:transdecoder_5.3.0

$ singularity pull shub://TomHarrop/singularity-containers:transdecoder_5.3.0

Singularity Recipe

Bootstrap: docker
From: ubuntu:18.04

%help

    TransDecoder 5.3.0
    https://github.com/TransDecoder/TransDecoder/wiki

%labels

    MAINTAINER "Tom Harrop"
    VERSION "TransDecoder 5.3.0"

%post

    # install dependencies
    apt-get update
    apt-get install -y \
        hmmer \
        language-pack-en \
        libany-uri-escape-perl \
        make \
        ncbi-blast+ \
        perl \
        wget

    # install TD
    wget -O "transdecoder.tar.gz" \
        --no-check-certificate \
        https://github.com/TransDecoder/TransDecoder/archive/TransDecoder-v5.3.0.tar.gz
    mkdir transdecoder
    tar -zxf transdecoder.tar.gz \
        -C transdecoder \
        --strip-components 1
    rm -f transdecoder.tar.gz

%environment

    export PATH="${PATH}:/transdecoder"

%runscript

    exec /transdecoder/TransDecoder.LongOrfs "$@"

Collection


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Metrics

key value
id /containers/TomHarrop-singularity-containers-transdecoder_5.3.0
collection name TomHarrop/singularity-containers
branch master
tag transdecoder_5.3.0
commit 5d255615ab338131511b9ee71291ac6cf57e002d
version (container hash) b1bc75e47da8f0ed4a49063d45db2ad6
build date 2018-09-24T07:21:04.891Z
size (MB) 323
size (bytes) 127090719
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
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