TomHarrop/singularity-containers:spades_3.13.0

$ singularity pull shub://TomHarrop/singularity-containers:spades_3.13.0

Singularity Recipe

Bootstrap: docker
From: ubuntu:18.04

%help

    Spades 3.13.0
    http://cab.spbu.ru/software/spades/

%labels

    MAINTAINER "Tom Harrop"
    VERSION "Spades 3.13.0"

%post

    # dependencies
    apt-get update
    apt-get install -y \
        build-essential \
        cmake \
        language-pack-en \
        libbz2-dev \
        python \
        wget \
        zlib1g-dev
        
    # install Spades
    wget -O "spades.tar.gz" \
        --no-check-certificate \
        http://cab.spbu.ru/files/release3.13.0/SPAdes-3.13.0.tar.gz
    mkdir spades
    tar -zxf spades.tar.gz \
        -C spades \
        --strip-components 1
    cd spades || exit 1
    PREFIX=/usr/local ./spades_compile.sh
    cd .. || exit 1
    rm -rf spades spades.tar.gz

%runscript

    exec /usr/local/bin/spades.py "$@"

Collection


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Metrics

key value
id /containers/TomHarrop-singularity-containers-spades_3.13.0
collection name TomHarrop/singularity-containers
branch master
tag spades_3.13.0
commit bc268f2329322fd56ab9d71822e5aed96435fc57
version (container hash) 085bb4c8715dc01fc291c70966ee5c4a
build date 2019-01-25T08:49:35.358Z
size (MB) 457
size (bytes) 160931871
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
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