TomHarrop/singularity-containers:scrmshaw_20180523
$ singularity pull shub://TomHarrop/singularity-containers:scrmshaw_20180523
Singularity Recipe
Bootstrap: docker
From: bioperl/bioperl:latest
%help
Container for SCRMshaw 05142018
http://halfonlab.ccr.buffalo.edu/scrmshaw.html
%labels
MAINTAINER "Tom Harrop"
VERSION "SCRMshaw 05142018"
%post
export DEBIAN_FRONTEND=noninteractive
# install apt packages
apt-get update \
&& apt-get install -y \
language-pack-en \
wget
# download scrmshaw
wget -O "scrmshaw.tar.gz" \
http://halfonlab.ccr.buffalo.edu/scrmshaw/SCRMshaw.05142018.tar.gz
mkdir scrmshaw
tar -zxf scrmshaw.tar.gz \
-C scrmshaw \
--strip-components 1
# build
cd scrmshaw || exit 1
make
chmod -R a+r /scrmshaw
chmod -R a+x /scrmshaw
# fix the example data
printf "/scrmshaw/example/test_data/mapping0.ap\n" \
> /scrmshaw/example/test_data/trainingSet.lst
# tidy up
cd .. || exit 1
rm scrmshaw.tar.gz
%runscript
exec /scrmshaw/code/scrm.pl "$@"
%environment
PATH="/scrmshaw/code:/scrmshaw/bin:${PATH}"
Collection
- Name: TomHarrop/singularity-containers
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/TomHarrop-singularity-containers-scrmshaw_20180523 |
collection name | TomHarrop/singularity-containers |
branch | master |
tag | scrmshaw_20180523 |
commit | 42d7e2da3c422334dd0a0120f3a3d0a3b268a9b5 |
version (container hash) | f39568cde123eace5881811d8c9e0345 |
build date | 2018-05-25T02:19:39.182Z |
size (MB) | 775 |
size (bytes) | 240390175 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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