TomHarrop/singularity-containers:scrmshaw_20180523

$ singularity pull shub://TomHarrop/singularity-containers:scrmshaw_20180523

Singularity Recipe

Bootstrap: docker
From: bioperl/bioperl:latest

%help

    Container for SCRMshaw 05142018
    http://halfonlab.ccr.buffalo.edu/scrmshaw.html

%labels

    MAINTAINER "Tom Harrop"
    VERSION "SCRMshaw 05142018"

%post

    export DEBIAN_FRONTEND=noninteractive

    # install apt packages
    apt-get update \
        && apt-get install -y \
        language-pack-en \
        wget

    # download scrmshaw
    wget -O "scrmshaw.tar.gz" \
        http://halfonlab.ccr.buffalo.edu/scrmshaw/SCRMshaw.05142018.tar.gz
    mkdir scrmshaw
    tar -zxf scrmshaw.tar.gz \
        -C scrmshaw \
        --strip-components 1

    # build
    cd scrmshaw || exit 1
    make
    chmod -R a+r /scrmshaw
    chmod -R a+x /scrmshaw

    # fix the example data
    printf "/scrmshaw/example/test_data/mapping0.ap\n" \
        > /scrmshaw/example/test_data/trainingSet.lst     

    # tidy up
    cd .. || exit 1
    rm scrmshaw.tar.gz

%runscript

    exec /scrmshaw/code/scrm.pl "$@"

%environment

    PATH="/scrmshaw/code:/scrmshaw/bin:${PATH}"

Collection


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Metrics

key value
id /containers/TomHarrop-singularity-containers-scrmshaw_20180523
collection name TomHarrop/singularity-containers
branch master
tag scrmshaw_20180523
commit 42d7e2da3c422334dd0a0120f3a3d0a3b268a9b5
version (container hash) f39568cde123eace5881811d8c9e0345
build date 2018-05-25T02:19:39.182Z
size (MB) 775
size (bytes) 240390175
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
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