TomHarrop/singularity-containers:sambamba_0.6.9

$ singularity pull shub://TomHarrop/singularity-containers:sambamba_0.6.9

Singularity Recipe

Bootstrap: docker
From: ubuntu:18.10

%help

    Container for sambamba 0.6.9
    http://bio-bwa.sourceforge.net/

%labels

    VERSION "sambamba 0.6.9"


%post

    # install dependencies via apt
    apt update
    apt install -y \
        wget

    # download static release from git
    wget \
        -O "sambamba.gz" \
        --no-check-certificate \
        https://github.com/biod/sambamba/releases/download/v0.6.9/sambamba-0.6.9-linux-static.gz
    gunzip sambamba.gz
    chmod 755 sambamba
    mv sambamba /usr/local/bin/


%runscript

    exec /usr/local/bin/sambamba "$@"

Collection


View on Datalad

Metrics

key value
id /containers/TomHarrop-singularity-containers-sambamba_0.6.9
collection name TomHarrop/singularity-containers
branch master
tag sambamba_0.6.9
commit 2841ec235f50c7af78afc7623ab1368eedff2529
version (container hash) 59c100c9c55e3b38c2bfd5d9e022d6b2
build date 2019-12-03T23:40:09.130Z
size (MB) 129
size (bytes) 54075423
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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