TomHarrop/singularity-containers:r_3.5.2

$ singularity pull shub://TomHarrop/singularity-containers:r_3.5.2

Singularity Recipe

Bootstrap: docker
From: rocker/verse:3.5.2

%help

    Container for plotting with R data.table and ggplot2

%labels

    MAINTAINER "Tom Harrop"
    VERSION "R 3.5.2"

%post

    # install depenedencies
    apt-get update
    apt-get install -y \
        libbz2-dev \
        liblzma-dev \
        libpcre++-dev 

    # install packages from bioconductor
    Rscript -e "options(Ncpus=8); \
        source('https://bioconductor.org/biocLite.R') ; \
        biocLite(c(\
            'Cairo', \
            'cowplot', \
            'data.table', \
            'extrafont', \
            'ggimage', \
            'ggtree', \
            'UpSetR', \
            'sysfonts', \
            'VennDiagram'), \
            type='source', ask=FALSE)"

    # install lato
    wget -O "lato.zip" \
        http://www.latofonts.com/download/Lato2OFL.zip
    unzip lato.zip
    mv Lato2OFL /usr/share/fonts/truetype/
    rm lato.zip
    fc-cache -f -v
    Rscript -e "library('extrafont') ; \
        font_import(prompt=FALSE) ; \
        loadfonts()"

%runscript

    exec /usr/local/bin/R "$@"

Collection


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Metrics

key value
id /containers/TomHarrop-singularity-containers-r_3.5.2
collection name TomHarrop/singularity-containers
branch master
tag r_3.5.2
commit ab0dfe940f1c57cacc6f7b0f0588e5fa0b560f54
version (container hash) f4e1feb1a9776e3e255c8fafeb033219
build date 2019-02-01T14:00:53.188Z
size (MB) 2510
size (bytes) 940613663
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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