TomHarrop/singularity-containers:r-mfuzz_2.38.0

$ singularity pull shub://TomHarrop/singularity-containers:r-mfuzz_2.38.0

Singularity Recipe

Bootstrap: docker
From: rocker/verse:3.4.4

%help

    Container for Mfuzz 2.38.0 in R 3.4.4 with data.table and DESeq2

%labels

    MAINTAINER "Tom Harrop"
    VERSION "R 3.4.4 with Mfuzz 2.38.0 and DESeq2 1.18.1"

%post

    # install depenedencies
    apt-get update
    apt-get install -y \
        tk-dev tcl-dev

    # install packages from bioconductor
    Rscript -e "options(Ncpus=8); \
        source('https://bioconductor.org/biocLite.R') ; \
        biocLite(c('data.table', 'DESeq2', 'Mfuzz'), \
            type='source', ask=FALSE)"

%runscript

    exec /usr/local/bin/R "$@"

Collection


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Metrics

key value
id /containers/TomHarrop-singularity-containers-r-mfuzz_2.38.0
collection name TomHarrop/singularity-containers
branch master
tag r-mfuzz_2.38.0
commit a1ddf489cab7e2174093a62e0c3483430b3237e8
version (container hash) 8071cabc09218f1b86af73f094411bae
build date 2018-09-19T07:00:17.345Z
size (MB) 2564
size (bytes) 982110239
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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