TomHarrop/singularity-containers:mothur_1.40.5

$ singularity pull shub://TomHarrop/singularity-containers:mothur_1.40.5

Singularity Recipe

Bootstrap: docker
From: ubuntu:18.04

%help

    Mothur 1.40.5
    https://www.mothur.org/wiki/Main_Page

%labels

    MAINTAINER "Tom Harrop"
    VERSION "Mothur 1.40.5"

%post

    # dependencies
    apt-get update
    apt-get install -y \
        build-essential \
        libboost-dev \
        libboost-iostreams-dev \
        libreadline-dev \
        wget \
        zlib1g-dev

    # install mothur
    wget -O "mothur.tar.gz" \
        --no-check-certificate \
        https://github.com/mothur/mothur/archive/v1.40.5.tar.gz
    mkdir mothur
    tar -zxf mothur.tar.gz \
        -C mothur \
        --strip-components 1
    cd mothur || exit 1
    make
    mv mothur /usr/local/bin/
    cd .. || exit 1
    rm -rf mothur mothur.tar.gz

%runscript

    exec /usr/local/bin/mothur "$@"

Collection


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Metrics

key value
id /containers/TomHarrop-singularity-containers-mothur_1.40.5
collection name TomHarrop/singularity-containers
branch master
tag mothur_1.40.5
commit 9b85f37aecfaf09cbc9dd7182ea63c4ccdc1b080
version (container hash) f0eab7bf3b6c7105395c1f783ddd55a5
build date 2018-09-27T01:15:52.389Z
size (MB) 622
size (bytes) 188686367
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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