TomHarrop/singularity-containers:meraculous_2.2.6

$ singularity pull shub://TomHarrop/singularity-containers:meraculous_2.2.6

Singularity Recipe

Bootstrap: docker
From: ubuntu:18.04

%help

    meraculous 2.2.6
    https://jgi.doe.gov/data-and-tools/meraculous/

%labels

    MAINTAINER "Tom Harrop (twharrop@gmail.com)"
    VERSION "meraculous 2.2.6"

%post

    # install dependencies
    apt-get update
    apt-get install -y \
        cmake \
        gcc-6 \
        g++-6 \
        gnuplot \
        language-pack-en \
        libgd-dev \
        libboost-dev \
        libboost-thread-dev \
        libboost-system-dev \
        libboost-filesystem-dev \
        liblog-log4perl-perl \
        make \
        perl \
        wget

    # download meraculous
    wget -O 'mer.tar.gz' \
        --no-check-certificate \
        'https://downloads.sourceforge.net/project/meraculous20/Meraculous-v2.2.6.tar.gz'
    mkdir mer
    tar -zxf mer.tar.gz \
        -C mer \
        --strip-components 1

    # build and install
    cd mer || exit 1
    mkdir build && cd build || exit 1
    export BOOST_ROOT=/usr/include/boost
    cmake \
        -DCMAKE_C_COMPILER=/usr/bin/gcc-6 \
        -DCMAKE_CXX_COMPILER=/usr/bin/g++-6 \
        -DCMAKE_BUILD_TYPE=Release \
        -DCMAKE_INSTALL_PREFIX=/usr/local \
        ..
    make && make install

    # tidy up
    cd ../../ || exit 1
    rm -rf mer mer.tar.gz

%runscript

    exec /usr/local/bin/run_meraculous.sh "$@"

Collection

• Name: TomHarrop/singularity-containers
• License: None

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