TomHarrop/singularity-containers:krakenuniq_0.5.8

$ singularity pull shub://TomHarrop/singularity-containers:krakenuniq_0.5.8

Singularity Recipe

Bootstrap: docker
From: ubuntu:19.04

%help

    krakenuniq 0.5.8
    https://github.com/fbreitwieser/krakenuniq

%labels

    MAINTAINER "Tom Harrop"
    VERSION "krakenuniq 0.5.8"

%post

    # dependencies
    apt update
    apt install -y \
        build-essential \
        cpanminus \
        curl \
        git \
        jellyfish1 \
        language-pack-en \
        ncbi-blast+ \
        wget \
        zlib1g-dev 

    # intall perl modules
    cpanm --force ExtUtils::Helpers
    cpanm LWP::Simple || cat /.cpanm/work/*/build.log

    # install krakenuniq
    wget -O krakenuniq.tar.gz \
        --no-check-certificate \
        https://github.com/fbreitwieser/krakenuniq/archive/v0.5.8.tar.gz

    mkdir krakenuniq
    tar -zxf krakenuniq.tar.gz \
        -C krakenuniq \
        --strip-components 1
    cd krakenuniq || exit 1
    ./install_krakenuniq.sh /usr/local/bin
    cd .. || exit 1
    rm -rf krakenuniq krakenuniq.tar.gz

%runscript

    exec /usr/local/bin/krakenuniq "$@"

Collection

• Name: TomHarrop/singularity-containers
• License: None

Metrics

Feedback

Was this page helpful?

Glad to hear it! Please tell us how we can improve.

Sorry to hear that. Please tell us how we can improve.