TomHarrop/singularity-containers:kraken_2.0.7beta

$ singularity pull shub://TomHarrop/singularity-containers:kraken_2.0.7beta

Singularity Recipe

Bootstrap: docker
From: ubuntu:18.04

%help

    kraken2 2.0.7-beta
    https://github.com/DerrickWood/kraken2

%labels

    MAINTAINER "Tom Harrop"
    VERSION "kraken2 2.0.7-beta"

%post

    # dependencies
    apt-get update
    apt-get install -y \
        build-essential \
        language-pack-en \
        libgomp1 \
        libopenmpi-dev \
        ncbi-blast+ \
        openmpi-bin \
        rsync \
        wget

    # install kraken
    wget -O kraken.tar.gz \
        --no-check-certificate \
        https://github.com/DerrickWood/kraken2/archive/v2.0.7-beta.tar.gz
    mkdir kraken
    tar -zxf kraken.tar.gz \
        -C kraken \
        --strip-components 1
    cd kraken || exit 1
    ./install_kraken2.sh /usr/local/bin
    cd .. || exit 1
    rm -rf kraken kraken.tar.gz

%runscript

    exec /usr/local/bin/kraken2 "$@"

Collection


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Metrics

key value
id /containers/TomHarrop-singularity-containers-kraken_2.0.7beta
collection name TomHarrop/singularity-containers
branch master
tag kraken_2.0.7beta
commit 1916677c9d4c4904c83df13e63280dec25aff79a
version (container hash) 4754a5150623f1991280351edf753921
build date 2019-12-10T23:34:08.685Z
size (MB) 496
size (bytes) 178880543
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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