TomHarrop/singularity-containers:guppy_3.1.5-nvidia410
$ singularity pull shub://TomHarrop/singularity-containers:guppy_3.1.5-nvidia410
Singularity Recipe
Bootstrap: docker
From: ubuntu:16.04
%help
Guppy 3.1.5 with nvidia-410
%labels
MAINTAINER "Tom Harrop"
VERSION "Guppy 3.1.5"
%post
export DEBIAN_FRONTEND=noninteractive
# deps
apt-get update
apt-get install -y \
apt-transport-https \
lsb-release \
nvidia-modprobe \
software-properties-common \
wget
# byo nvidia driver
add-apt-repository -y ppa:graphics-drivers/ppa
apt update
apt install -y nvidia-410 libcuda1-410
# install guppy from ONT repo
export PLATFORM=$(lsb_release -cs)
wget -O- https://mirror.oxfordnanoportal.com/apt/ont-repo.pub \
| apt-key add -
echo \
"deb http://mirror.oxfordnanoportal.com/apt ${PLATFORM}-stable non-free" \
| tee /etc/apt/sources.list.d/nanoporetech.sources.list
apt-get update
apt-get install -y \
--no-install-recommends \
ont-guppy=3.1.5-1~xenial
%runscript
exec /usr/bin/guppy_basecaller "$@"
Collection
- Name: TomHarrop/singularity-containers
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/TomHarrop-singularity-containers-guppy_3.1.5-nvidia410 |
collection name | TomHarrop/singularity-containers |
branch | master |
tag | guppy_3.1.5-nvidia410 |
commit | 5cc8496183d02d1d177f2493ff5e5ba4a288edb9 |
version (container hash) | 6714272c67be1708605468fb999b99a6 |
build date | 2019-10-30T01:27:28.685Z |
size (MB) | 2213 |
size (bytes) | 727466015 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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