TomHarrop/singularity-containers:guppy_3.0.3

$ singularity pull shub://TomHarrop/singularity-containers:guppy_3.0.3

Singularity Recipe

Bootstrap: docker
From: ubuntu:16.04

%help
    Guppy 3.0.3

%labels
    MAINTAINER "Tom Harrop"
    VERSION "Guppy 3.0.3"

%post
    # deps
    apt-get update
    apt-get install -y \
        apt-transport-https \
        lsb-release \
        wget 

    # install guppy from ONT repo
    export PLATFORM=$(lsb_release -cs) 
    wget -O- https://mirror.oxfordnanoportal.com/apt/ont-repo.pub \
        | apt-key add - 
    echo \
        "deb http://mirror.oxfordnanoportal.com/apt ${PLATFORM}-stable non-free" \
        | tee /etc/apt/sources.list.d/nanoporetech.sources.list 
    apt-get update
    DEBIAN_FRONTEND=noninteractive \
        apt-get install -y \
        ont-guppy=3.0.3-1~xenial \
        nvidia-modprobe

%runscript
    exec /usr/bin/guppy_basecaller "$@"

Collection


View on Datalad

Metrics

key value
id /containers/TomHarrop-singularity-containers-guppy_3.0.3
collection name TomHarrop/singularity-containers
branch master
tag guppy_3.0.3
commit 011bb5e7e97c2262985b8fe9fdbc8b5553917499
version (container hash) a5310df4549d757236df790acb60d6d2
build date 2019-05-13T10:27:26.595Z
size (MB) 2093
size (bytes) 686620703
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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