TomHarrop/singularity-containers:guppy_2.3.5

$ singularity pull shub://TomHarrop/singularity-containers:guppy_2.3.5

Singularity Recipe

Bootstrap: docker
From: ubuntu:16.04

%help
    Guppy 2.3.5

%labels
    MAINTAINER "Tom Harrop"
    VERSION "Guppy 2.3.5"

%post
    # deps
    apt-get update
    apt-get install -y \
        apt-transport-https \
        lsb-release \
        wget 

    # install guppy from ONT repo
    export PLATFORM=$(lsb_release -cs) 
    wget -O- https://mirror.oxfordnanoportal.com/apt/ont-repo.pub \
        | apt-key add - 
    echo \
        "deb http://mirror.oxfordnanoportal.com/apt ${PLATFORM}-stable non-free" \
        | tee /etc/apt/sources.list.d/nanoporetech.sources.list 
    apt-get update
    DEBIAN_FRONTEND=noninteractive \
        apt-get install -y \
        ont-guppy=2.3.5-1~xenial

%runscript
    exec /usr/bin/guppy_basecaller "$@"

Collection


View on Datalad

Metrics

key value
id /containers/TomHarrop-singularity-containers-guppy_2.3.5
collection name TomHarrop/singularity-containers
branch master
tag guppy_2.3.5
commit 0f6a9e66f884eeeaee2b3a8b9a9e32423d625c64
version (container hash) 08709be3f471785206c84dd2eaba0a6a
build date 2019-02-27T08:08:59.301Z
size (MB) 1880
size (bytes) 643211295
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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