TomHarrop/singularity-containers:clustalo_1.2.4

$ singularity pull shub://TomHarrop/singularity-containers:clustalo_1.2.4

Singularity Recipe

Bootstrap: docker
From: ubuntu:18.04

%help

    Clustal Omega 1.2.4
    http://www.clustal.org/omega/
    trimAl 1.4.1
    https://github.com/scapella/trimal/releases

%labels

    MAINTAINER "Tom Harrop"
    VERSION "clustalo 1.2.4"

%post

    # dependencies
    apt-get update
    apt-get install -y \
        build-essential \
        language-pack-en \
        libargtable2-dev \
        libgomp1 \
        libopenmpi-dev \
        openmpi-bin \
        wget

    # install clustalo
    wget -O clustalo.tar.gz \
        --no-check-certificate \
        http://www.clustal.org/omega/clustal-omega-1.2.4.tar.gz
    mkdir clustalo
    tar -zxf clustalo.tar.gz \
        -C clustalo \
        --strip-components 1
    cd clustalo || exit 1
    ./configure
    make
    make install
    cd .. || exit 1
    rm -rf clustalo clustalo.tar.gz

    # install trimal
    wget -O trimal.tar.gz \
        --no-check-certificate \
        https://github.com/scapella/trimal/archive/v1.4.1.tar.gz
    mkdir trimal
    tar -zxf trimal.tar.gz \
        -C trimal \
        --strip-components 1
    cd trimal/source || exit 1
    make
    cp readal statal trimal /usr/local/bin/
    cd ../../ || exit 1
    rm -rf trimal trimal.tar.gz

%runscript

    exec /usr/local/bin/clustalo "$@"

Collection

• Name: TomHarrop/singularity-containers
• License: None

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