TomHarrop/singularity-containers:canu_1.8

$ singularity pull shub://TomHarrop/singularity-containers:canu_1.8

Singularity Recipe

Bootstrap: docker
From: ubuntu:18.10 

%help

    Container for Canu 1.8
    https://github.com/marbl/canu

%labels

    VERSION "Canu 1.8"

%post

    # dependencies
    apt-get update
    apt-get install -y \
        build-essential \
        gnuplot \
        language-pack-en \
        openjdk-8-jre \
        perl \
        wget

    # install Canu
    wget -O "canu.tar.gz" \
        --no-check-certificate \
        https://github.com/marbl/canu/archive/v1.8.tar.gz
    mkdir canu
    tar -zxf canu.tar.gz \
        -C canu \
        --strip-components 1
    cd canu/src || exit 1
    make
    cd ../.. || exit 1
    rm -rf canu.tar.gz

%environment

    export PATH="${PATH}:/canu/Linux-amd64/bin"

%runscript

    exec /canu/Linux-amd64/bin/canu "$@"

Collection


View on Datalad

Metrics

key value
id /containers/TomHarrop-singularity-containers-canu_1.8
collection name TomHarrop/singularity-containers
branch master
tag canu_1.8
commit be2d35a5a8b2350270900221aaeff5a0a104a359
version (container hash) 2a22e8402e4ad63eb607806c22dac5f3
build date 2018-12-03T09:49:40.921Z
size (MB) 1198
size (bytes) 380846111
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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