TomHarrop/singularity-containers:bracken_2.2

$ singularity pull shub://TomHarrop/singularity-containers:bracken_2.2

Singularity Recipe

Bootstrap: shub
From: TomHarrop/singularity-containers:kraken_2.0.8beta

%help

    bracken 2.2
    https://github.com/jenniferlu717/Bracken

%labels

    MAINTAINER "Tom Harrop"
    VERSION "bracken 2.2"

%post
    # install bracken
    wget -O bracken.tar.gz \
        --no-check-certificate \
        https://github.com/jenniferlu717/Bracken/archive/v2.2.tar.gz
    mkdir bracken
    tar -zxf bracken.tar.gz \
        -C bracken \
        --strip-components 1
    cd bracken/src || exit 1
    make
    cd ../.. || exit 1
    rm bracken.tar.gz

%environment
    export PATH="${PATH}:/bracken:/bracken/src"

%runscript

    exec /bracken/bracken "$@"

Collection


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Metrics

key value
id /containers/TomHarrop-singularity-containers-bracken_2.2
collection name TomHarrop/singularity-containers
branch master
tag bracken_2.2
commit 5c2812870e3db907993a0304afb24289887d501e
version (container hash) 57b002998bb026cc75c32d6c4f7f261e
build date 2019-06-13T22:59:54.038Z
size (MB) 487
size (bytes) 169119775
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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