TomHarrop/singularity-containers:bbmap_38.50b

$ singularity pull shub://TomHarrop/singularity-containers:bbmap_38.50b

Singularity Recipe

Bootstrap: shub
From: TomHarrop/singularity-containers:samtools_1.9

%help
    Container for BBMap 38.50b
    https://jgi.doe.gov/data-and-tools/bbtools/

%labels
    MAINTAINER "Tom Harrop"
    VERSION "BBMap 38.50b"

%post
    apk add --update \
        gawk \
        openjdk8

    wget -O "bbmap.tar.gz" \
        "https://sourceforge.net/projects/bbmap/files/BBMap_38.50b.tar.gz"
    mkdir bbmap-install
    tar -zxf bbmap.tar.gz \
        -C bbmap-install \
        --strip-components 1
    cp -r bbmap-install/resources/* /
    cp -r bbmap-install/* /usr/local/bin/
    rm -rf bbmap.tar.gz bbmap-install

Collection


View on Datalad

Metrics

key value
id /containers/TomHarrop-singularity-containers-bbmap_38.50b
collection name TomHarrop/singularity-containers
branch master
tag bbmap_38.50b
commit 09d882ad834d388c91f282bafaffbabb875204ad
version (container hash) 0b928c58d46bf1e558b4020708896240
build date 2020-02-17T02:57:05.062Z
size (MB) 360
size (bytes) 161767455
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
We cannot guarantee that all containers will still exist on GitHub.