TomHarrop/singularity-containers:bbmap_38.45

$ singularity pull shub://TomHarrop/singularity-containers:bbmap_38.45

Singularity Recipe

Bootstrap: shub
From: TomHarrop/singularity-containers:samtools_1.9

%help
    Container for BBMap 38.45
    https://jgi.doe.gov/data-and-tools/bbtools/

%labels
    MAINTAINER "Tom Harrop"
    VERSION "BBMap 38.45"

%post
    apk add --update \
        gawk \
        openjdk8

    wget -O "bbmap.tar.gz" \
        "https://sourceforge.net/projects/bbmap/files/BBMap_38.45.tar.gz"
    mkdir bbmap-install
    tar -zxf bbmap.tar.gz \
        -C bbmap-install \
        --strip-components 1
    cp -r bbmap-install/resources/* /
    cp -r bbmap-install/* /usr/local/bin/
    rm -rf bbmap.tar.gz bbmap-install

Collection


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Metrics

key value
id /containers/TomHarrop-singularity-containers-bbmap_38.45
collection name TomHarrop/singularity-containers
branch master
tag bbmap_38.45
commit 97f58c68895c1646e59f007b21da4c9fbf417de0
version (container hash) c091a4a66dd7a7f7cb091ae6c039d556
build date 2019-04-29T05:02:43.986Z
size (MB) 360
size (bytes) 161673247
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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