TomHarrop/seq-utils:seqtk_1.3r106

$ singularity pull shub://TomHarrop/seq-utils:seqtk_1.3r106

Singularity Recipe

Bootstrap: docker
From: alpine:3.10.3

%help
    Seqtk 1.3 (r106)
    
%labels
    MAINTAINER "Tom Harrop (twharrop@gmail.com)"
    VERSION "Seqtk 1.3 (r106)"

%post
    # dependencies
    apk add --update \
        bash \
        build-base \
        zlib-dev

    # download seqtk
    wget \
        -O  seqtk.tar.gz \
        --no-check-certificate \
        https://github.com/lh3/seqtk/archive/v1.3.tar.gz
    mkdir seqtk
    tar -zxf seqtk.tar.gz \
        -C seqtk \
        --strip-components 1
    
    # build & install
    cd seqtk || exit 1
    make
    make install

    # tidy up
    cd .. || exit 1
    rm -rf seqtk seqtk.tar.gz

%runscript
    exec /usr/local/bin/seqtk "$@"

Collection


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Metrics

key value
id /containers/TomHarrop-seq-utils-seqtk_1.3r106
collection name TomHarrop/seq-utils
branch master
tag seqtk_1.3r106
commit cd07278aabfe76ff52c524190ccbc5a5153a9061
version (container hash) fa5b5a3190e6c330ecc0dcb9483dbd4f46950fa0b0d126687123ffdb2d152897
build date 2019-11-19T23:11:20.068Z
size (MB) 57.53515625
size (bytes) 60329984
SIF Download URL (please use pull with shub://)
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