TomHarrop/seq-utils:bbmap_38.86

$ singularity pull shub://TomHarrop/seq-utils:bbmap_38.86

Singularity Recipe

Bootstrap: shub
From: TomHarrop/align-utils:samtools_1.10

%help
    Container for BBMap 38.86
    https://jgi.doe.gov/data-and-tools/bbtools/

%labels
    MAINTAINER "Tom Harrop"
    VERSION "BBMap 38.86"

%post
    apt-get update
    apt-get install -y \
        default-jre-headless \
        gawk \
        pigz
     
    wget -O "bbmap.tar.gz" \
        "https://sourceforge.net/projects/bbmap/files/BBMap_38.86.tar.gz/download"
    mkdir bbmap-install
    tar -zxf bbmap.tar.gz \
        -C bbmap-install \
        --strip-components 1
    cp -r bbmap-install/resources/* /
    cp -r bbmap-install/* /usr/local/bin/
    rm -rf bbmap.tar.gz bbmap-install

Collection


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key value
id /containers/TomHarrop-seq-utils-bbmap_38.86
collection name TomHarrop/seq-utils
branch master
tag bbmap_38.86
commit 81414c30d368ee8914ad4d69ea3259ad88f90277
version (container hash) f26c85fcae296349911cee4cd979e7650b833c89dc7636a5d178978d385f4e88
build date 2021-03-03T10:36:20.432Z
size (MB) 478.38671875
size (bytes) 501624832
SIF Download URL (please use pull with shub://)
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