TomHarrop/seq-utils:bbmap_38.76

$ singularity pull shub://TomHarrop/seq-utils:bbmap_38.76

Singularity Recipe

Bootstrap: shub
From: TomHarrop/singularity-containers:samtools_1.9

%help
    Container for BBMap 38.76
    https://jgi.doe.gov/data-and-tools/bbtools/

%labels
    MAINTAINER "Tom Harrop"
    VERSION "BBMap 38.76"

%post
    apk add --update \
        gawk \
        openjdk8

    wget -O "bbmap.tar.gz" \
        "https://sourceforge.net/projects/bbmap/files/BBMap_38.76.tar.gz"
    mkdir bbmap-install
    tar -zxf bbmap.tar.gz \
        -C bbmap-install \
        --strip-components 1
    cp -r bbmap-install/resources/* /
    cp -r bbmap-install/* /usr/local/bin/
    rm -rf bbmap.tar.gz bbmap-install

Collection


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Metrics

key value
id /containers/TomHarrop-seq-utils-bbmap_38.76
collection name TomHarrop/seq-utils
branch master
tag bbmap_38.76
commit aaac7a1eb699dbb70dfcb4684ae8df46e2d296de
version (container hash) 597688a84f246245761092d696fcea1d071bb355485be8c4acba24c571543377
build date 2021-03-15T23:21:08.601Z
size (MB) 227.0
size (bytes) 161067008
SIF Download URL (please use pull with shub://)
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