TomHarrop/r-containers:r_3.6.2

$ singularity pull shub://TomHarrop/r-containers:r_3.6.2

Singularity Recipe

Bootstrap: docker
From: rocker/verse:3.6.2

%help

    Container for plotting with R data.table and ggplot2

%labels

    MAINTAINER "Tom Harrop"
    VERSION "R 3.6.2"

%post

    # install dependencies
    apt-get update
    apt-get install -y \
        libbz2-dev \
        liblzma-dev \
        libpcre++-dev 

    # install packages from bioconductor
    Rscript -e "options(Ncpus=8); \
        install.packages('BiocManager') ; \
        BiocManager::install(c(\
            'Cairo', \
            'cowplot', \
            'data.table', \
            'extrafont', \
            'ggimage', \
            'ggtree', \
            'hexbin', \
            'sysfonts', \
            'UpSetR', \
            'VennDiagram', \
            'viridis'), 
            type='source', ask=FALSE)"

    # install lato
    wget -O "lato.zip" \
        http://www.latofonts.com/download/Lato2OFL.zip
    unzip lato.zip
    mv Lato2OFL /usr/share/fonts/truetype/
    rm lato.zip
    fc-cache -f -v
    Rscript -e "library('extrafont') ; \
        font_import(prompt=FALSE) ; \
        loadfonts()"

%runscript

    exec /usr/local/bin/R "$@"

Collection

• Name: TomHarrop/r-containers
• License: None

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