TomHarrop/r-containers:bioconductor_3.11

$ singularity pull shub://TomHarrop/r-containers:bioconductor_3.11

Singularity Recipe

Bootstrap: docker
From: bioconductor/bioconductor_docker:RELEASE_3_11

%help

    R 4.0.0 with Bioconductor 3.11
    
%labels

    MAINTAINER "Tom Harrop (twharrop@gmail.com)"
    VERSION "Bioconductor 3.11"

%post
    # install packages from bioconductor
    Rscript -e "options(Ncpus=8); \
        BiocManager::install(c( \
            'adegenet', \
            'apeglm', \
            'ashr', \
            'Biostrings', \
            'dada2', \
            'DESeq2', \
            'future.apply', \
            'GenomicAlignments', \
            'GenomicFeatures', \
            'GenomicRanges', \
            'Gviz', \
            'Mfuzz', \
            'pheatmap', \
            'phyloseq', \
            'rehh', \
            'ShortRead', \
            'SNPRelate', \
            'systemPipeR', \
            'tximport', \
            'tximeta', \
            'valr', \
            'VariantAnnotation', \
            'vcfR' \
            ), \
        type='source', ask=FALSE)"

%runscript

    exec /usr/local/bin/R "$@"

Collection


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Metrics

key value
id /containers/TomHarrop-r-containers-bioconductor_3.11
collection name TomHarrop/r-containers
branch master
tag bioconductor_3.11
commit ae3e49fbdb6c7a9a05fc5b88cc55ac3663b40036
version (container hash) 90e5137662810c688b0c3149b7acd5bb9d5163f1bc7e997fb7d47bcc7ee2dd6c
build date 2021-04-13T02:15:38.947Z
size (MB) 1561.7578125
size (bytes) 1637621760
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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