TomHarrop/r-containers:bioconductor_3.10

$ singularity pull shub://TomHarrop/r-containers:bioconductor_3.10

Singularity Recipe

Bootstrap: docker
From: bioconductor/bioconductor_full:RELEASE_3_10

%help

    R 3.6.1 with Bioconductor 3.10
    
%labels

    MAINTAINER "Tom Harrop (twharrop@gmail.com)"
    VERSION "Bioconductor 3.10"

%post
    # install packages from bioconductor
    Rscript -e "options(Ncpus=8); \
        BiocManager::install(c( \
            'adegenet', \
            'Biostrings', \
            'dada2', \
            'DESeq2', \
            'GenomicAlignments', \
            'GenomicFeatures', \
            'GenomicRanges', \
            'Gviz', \
            'Mfuzz', \
            'pheatmap', \
            'phyloseq', \
            'ShortRead', \
            'SNPRelate', \
            'systemPipeR', \
            'tximport', \
            'valr', \
            'VariantAnnotation', \
            'vcfR' \
            ), \
        type='source', ask=FALSE)"

%runscript

    exec /usr/local/bin/R "$@"

Collection


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Metrics

key value
id /containers/TomHarrop-r-containers-bioconductor_3.10
collection name TomHarrop/r-containers
branch master
tag bioconductor_3.10
commit 22b77812ec8211c7bbe29c9bbfc6dfba6a833982
version (container hash) 3e5f3908a1390ac19cd46ea7c895b861c4604b9c7fc9e5ea9275dab40ad218b5
build date 2021-03-01T03:47:57.989Z
size (MB) 1294.71484375
size (bytes) 1357606912
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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