TomHarrop/phase-honeybee-vcf:phase_honeybee_vcf_v0.0.2

$ singularity pull shub://TomHarrop/phase-honeybee-vcf:phase_honeybee_vcf_v0.0.2

Singularity Recipe

Bootstrap: docker
From: python:3.8.6-buster

%help
    Container for phase-honeybee-vcf v0.0.2

%labels
    VERSION "phase-honeybee-vcf v0.0.2"
    MAINTAINER "Tom Harrop"

%post
    export DEBIAN_FRONTEND=noninteractive
    export LC_ALL=C

    apt-get update
    apt-get install -y \
        bcftools \
        build-essential \
        libcrypto++-dev \
        minimap2 \
        samtools \
        tabix

    /usr/local/bin/python3 -m pip \
        install --upgrade \
        pip \
        setuptools \
        wheel

    /usr/local/bin/python3 -m pip \
        install \
    	git+https://github.com/whatshap/whatshap@491ec8e

    /usr/local/bin/python3 -m pip \
        install \
        git+git://github.com/tomharrop/phase-honeybee-vcf.git@v0.0.2

%runscript
    exec /usr/local/bin/phase_honeybee_vcf "$@"

Collection


View on Datalad

Metrics

key value
id /containers/TomHarrop-phase-honeybee-vcf-phase_honeybee_vcf_v0.0.2
collection name TomHarrop/phase-honeybee-vcf
branch master
tag phase_honeybee_vcf_v0.0.2
commit 9f96a884d3cacf2c7070239099cb0672d604faed
version (container hash) 5af932d302d204533c8cc9fa6bf828de22d9632f48c2214da922a5e88d83e58e
build date 2020-12-12T05:30:36.187Z
size (MB) 635.61328125
size (bytes) 666488832
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
We cannot guarantee that all containers will still exist on GitHub.