TomHarrop/ont-containers:porechop_0.2.3

$ singularity pull shub://TomHarrop/ont-containers:porechop_0.2.3

Singularity Recipe

Bootstrap: docker
From: python:3.6.6-stretch

%help
    Porechop 0.2.3
    https://github.com/rrwick/Porechop

%labels
    MAINTAINER "Tom Harrop"
    VERSION "Porechop 0.2.3"

%post
    # install dependencies
    apt-get update
    apt-get install -y \
        build-essential

    # install porechop
    wget -O "porechop.tar.gz" \
        --no-check-certificate \
        https://github.com/rrwick/Porechop/archive/v0.2.3.tar.gz
    mkdir porechop
    tar -zxf porechop.tar.gz \
        -C porechop \
        --strip-components 1
    cd porechop || exit 1
    python3 setup.py install
    cd .. || exit 1
    rm -rf porechop porechop.tar.gz

%runscript
    exec /usr/local/bin/porechop "$@"

Collection


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Metrics

key value
id /containers/TomHarrop-ont-containers-porechop_0.2.3
collection name TomHarrop/ont-containers
branch master
tag porechop_0.2.3
commit 7a3a689ffea8ea81d69d04fe13ee050cd1bab69b
version (container hash) 5e7059dca498b79cb11ecfbf48d14e4603eb2ed6a58a000976125164fd6e8afa
build date 2020-12-10T00:20:00.111Z
size (MB) 316.4921875
size (bytes) 331866112
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
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