TomHarrop/ont-containers:minionqc_1.4.2

$ singularity pull shub://TomHarrop/ont-containers:minionqc_1.4.2

Singularity Recipe

Bootstrap: docker
From: rocker/verse:4.0.3

%help
    Container for MinIONQC.R
    https://github.com/roblanf/minion_qc

%labels
    MAINTAINER "Tom Harrop"
    VERSION "MinIONQC.R 1.4.2"

%post
    # install package deps
    Rscript -e "options(Ncpus=8); \
        install.packages(c(\
            'futile.logger', \
            'optparse', \
            'plyr', \
            'reshape2', \
            'viridis'), \
            type='source', ask=FALSE)"

    # install minionqc.R
    wget -O /usr/local/bin/MinIONQC.R \
        --no-check-certificate \
        https://github.com/roblanf/minion_qc/releases/download/1.4.2/MinIONQC.R
    chmod 755 /usr/local/bin/MinIONQC.R

%runscript
    exec /usr/local/bin/Rscript /usr/local/bin/MinIONQC.R "$@"

Collection


View on Datalad

Metrics

key value
id /containers/TomHarrop-ont-containers-minionqc_1.4.2
collection name TomHarrop/ont-containers
branch master
tag minionqc_1.4.2
commit 1d9880398bedf64b175eae81ef240156e440de34
version (container hash) 889fe2b45280bc125dc6133ecb1d82506f9e96700d03f1d18aff724e0ca13a67
build date 2020-11-30T22:26:49.944Z
size (MB) 1206.12109375
size (bytes) 1264709632
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
We cannot guarantee that all containers will still exist on GitHub.