TomHarrop/ont-containers:minionqc_1.4.1

$ singularity pull shub://TomHarrop/ont-containers:minionqc_1.4.1

Singularity Recipe

Bootstrap: docker
From: rocker/verse:3.5.3

%help
    Container for MinIONQC.R
    https://github.com/roblanf/minion_qc

%labels
    MAINTAINER "Tom Harrop"
    VERSION "MinIONQC.R 1.4.1"

%post
    # install package deps
    Rscript -e "options(Ncpus=8); \
        install.packages(c(\
            'futile.logger', \
            'optparse', \
            'viridis'), \
            type='source', ask=FALSE)"

    # install minionqc.R
    wget -O /usr/local/bin/MinIONQC.R \
        --no-check-certificate \
        https://github.com/roblanf/minion_qc/releases/download/v1.4.1/MinIONQC.R
    chmod 755 /usr/local/bin/MinIONQC.R

%runscript
    exec /usr/local/bin/Rscript /usr/local/bin/MinIONQC.R "$@"

Collection


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Metrics

key value
id /containers/TomHarrop-ont-containers-minionqc_1.4.1
collection name TomHarrop/ont-containers
branch master
tag minionqc_1.4.1
commit dc7cdb0d33429691055e41f8bb6f6cf5697ccea9
version (container hash) a08ebcd3c81c8686894386254af7bc0289ae342ec7f23fadcb98e30feba38b71
build date 2020-11-30T20:26:47.886Z
size (MB) 901.93359375
size (bytes) 945745920
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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