TomHarrop/ont-containers:guppy_3.3.3-nvidia418
$ singularity pull shub://TomHarrop/ont-containers:guppy_3.3.3-nvidia418
Singularity Recipe
Bootstrap: docker
From: ubuntu:16.04
%help
Guppy 3.3.3 with nvidia-410
%labels
MAINTAINER "Tom Harrop"
VERSION "Guppy 3.3.3"
%post
# faster apt downloads, will it break?
export DEBIAN_FRONTEND=noninteractive
(
. /etc/os-release
cat << _EOF_ > mirror.txt
deb mirror://mirrors.ubuntu.com/mirrors.txt ${UBUNTU_CODENAME} main restricted universe multiverse
deb mirror://mirrors.ubuntu.com/mirrors.txt ${UBUNTU_CODENAME}-updates main restricted universe multiverse
deb mirror://mirrors.ubuntu.com/mirrors.txt ${UBUNTU_CODENAME}-backports main restricted universe multiverse
deb mirror://mirrors.ubuntu.com/mirrors.txt ${UBUNTU_CODENAME}-security main restricted universe multiverse
_EOF_
mv /etc/apt/sources.list /etc/apt/sources.list.bak
cat mirror.txt /etc/apt/sources.list.bak > /etc/apt/sources.list
)
# deps
apt-get update
apt-get install -y \
apt-transport-https \
lsb-release \
nvidia-modprobe \
software-properties-common \
wget
# byo nvidia driver
add-apt-repository -y ppa:graphics-drivers/ppa
apt update
apt-get install -y \
--no-install-recommends \
libcuda1-418 \
nvidia-418
# install guppy from ONT repo
export PLATFORM=$(lsb_release -cs)
wget -O- https://mirror.oxfordnanoportal.com/apt/ont-repo.pub \
| apt-key add -
echo \
"deb http://mirror.oxfordnanoportal.com/apt ${PLATFORM}-stable non-free" \
| tee /etc/apt/sources.list.d/nanoporetech.sources.list
apt-get update
apt-get install -y \
--no-install-recommends \
ont-guppy=3.3.3-1~xenial
%runscript
exec /usr/bin/guppy_basecaller "$@"
Collection
- Name: TomHarrop/ont-containers
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/TomHarrop-ont-containers-guppy_3.3.3-nvidia418 |
collection name | TomHarrop/ont-containers |
branch | master |
tag | guppy_3.3.3-nvidia418 |
commit | 6c92a77f3ef40cfbffe3b6dabddf4bc450afebab |
version (container hash) | cb2097c93a5f549bfaa74248bfef0ed594c2728e673b6a0451b00cbc00b510c1 |
build date | 2019-12-03T02:50:25.163Z |
size (MB) | 579.48828125 |
size (bytes) | 607637504 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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