TomHarrop/ont-containers:chopchop_a301f2d
$ singularity pull shub://TomHarrop/ont-containers:chopchop_a301f2d
Singularity Recipe
Bootstrap: docker
From: python:2.7.16-buster
%help
Python 2.7.16 with chopchop a301f2d
%labels
MAINTAINER "Tom Harrop (twharrop@gmail.com)"
VERSION "chopchop a301f2d"
%runscript
exec /usr/local/bin/python /chopchop/chopchop.py "$@"
%post
# python dependencies
/usr/local/bin/pip install \
argparse \
biopython \
keras \
mysqlclient \
np-utils \
numpy \
pandas \
scikit-learn==0.18.0 \
scipy
# ucsc's gff3ToGenePred
wget \
-O /usr/local/bin/gff3ToGenePred \
http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/gff3ToGenePred
chmod 755 /usr/local/bin/gff3ToGenePred
# chopchop
git clone \
https://bitbucket.org/valenlab/chopchop.git
cd chopchop || exit 1
git checkout a301f2d
%environment
export PATH="${PATH}:/chopchop:/chopchop/bowtie:/chopchop/svm_light"
Collection
- Name: TomHarrop/ont-containers
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/TomHarrop-ont-containers-chopchop_a301f2d |
collection name | TomHarrop/ont-containers |
branch | master |
tag | chopchop_a301f2d |
commit | 641f5cf731f2e70d44b54ab0e2143e58d5bcab63 |
version (container hash) | 0ef558220834da993437c922a6186d0869f008417e81147ce20890ffea974e30 |
build date | 2019-11-04T01:32:52.545Z |
size (MB) | 583.1796875 |
size (bytes) | 611508224 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
Feedback
Was this page helpful?
Glad to hear it! Please tell us how we can improve.
Sorry to hear that. Please tell us how we can improve.