TomHarrop/funannotate-singularity:tetools_1.1

$ singularity pull shub://TomHarrop/funannotate-singularity:tetools_1.1

Singularity Recipe

Bootstrap: docker
From: dfam/tetools:1.1

%environment
    export LC_ALL=C
    export PATH="${PATH}:/opt"

%post
    export DEBIAN_FRONTEND=noninteractive
    export LC_ALL=C
    export PATH="${PATH}:/opt"

    # RM is configured for trf to be in /opt/trf
    wget \
        -O /opt/trf \
        http://tandem.bu.edu/trf/downloads/trf409.linux64
    chmod +x /opt/trf

    # allow writing to RM Library dir
    chmod -R 777 /opt/RepeatMasker/Libraries

%runscript
    exec /opt/RepeatMasker/RepeatMasker "$@"

Collection


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Metrics

key value
id /containers/TomHarrop-funannotate-singularity-tetools_1.1
collection name TomHarrop/funannotate-singularity
branch master
tag tetools_1.1
commit bb76746301e841424c8efbec0fab06f0c9f567c0
version (container hash) 7887bd0a6d1891d8014aaed191e5aabc9b536e8fc8b6d7e19bb0aaf6276efb0d
build date 2020-06-17T01:33:01.110Z
size (MB) 863.78125
size (bytes) 905740288
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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