TomHarrop/biopython-index-test:biopython_index_test
$ singularity pull shub://TomHarrop/biopython-index-test:biopython_index_test
Singularity Recipe
Bootstrap: shub
From: TomHarrop/singularity-containers:biopython_1.73
%runscript
python3 /index_reads.py
%setup
mydir=$(mktemp -d)
cd "${mydir}" || exit 1
git clone https://github.com/TomHarrop/biopython-index-test.git
cd biopython-index-test || exit 1
rm r1.fq.gz
wget -O r1.fq.gz \
--no-check-certificate \
https://github.com/TomHarrop/biopython-index-test/raw/master/r1.fq.gz
gunzip r1.fq.gz
cp r1.fq ${SINGULARITY_ROOTFS}/r1.fq
cp index_reads.py ${SINGULARITY_ROOTFS}/index_reads.py
cd .. || exit 1
cd .. || exit 1
rm -rf "${mydir}"
Collection
- Name: TomHarrop/biopython-index-test
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/TomHarrop-biopython-index-test-biopython_index_test |
collection name | TomHarrop/biopython-index-test |
branch | master |
tag | biopython_index_test |
commit | 5acb1779464fc8b28ae21be246eb57671736876e |
version (container hash) | 51463e59141983d6a8aa871bba15c973 |
build date | 2019-05-09T08:14:52.685Z |
size (MB) | 1966 |
size (bytes) | 615325727 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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