TomHarrop/biopython-index-test:biopython_index_test

$ singularity pull shub://TomHarrop/biopython-index-test:biopython_index_test

Singularity Recipe

Bootstrap: shub
From: TomHarrop/singularity-containers:biopython_1.73

%runscript
    python3 /index_reads.py

%setup
    mydir=$(mktemp -d)
    cd "${mydir}" || exit 1
    git clone https://github.com/TomHarrop/biopython-index-test.git
    cd biopython-index-test || exit 1
    rm r1.fq.gz
    wget -O r1.fq.gz \
        --no-check-certificate \
        https://github.com/TomHarrop/biopython-index-test/raw/master/r1.fq.gz
    gunzip r1.fq.gz
    cp r1.fq ${SINGULARITY_ROOTFS}/r1.fq
    cp index_reads.py ${SINGULARITY_ROOTFS}/index_reads.py
    cd .. || exit 1
    cd .. || exit 1
    rm -rf "${mydir}"

Collection


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Metrics

key value
id /containers/TomHarrop-biopython-index-test-biopython_index_test
collection name TomHarrop/biopython-index-test
branch master
tag biopython_index_test
commit 5acb1779464fc8b28ae21be246eb57671736876e
version (container hash) 51463e59141983d6a8aa871bba15c973
build date 2019-05-09T08:14:52.685Z
size (MB) 1966
size (bytes) 615325727
SIF Download URL (please use pull with shub://)
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