TomHarrop/assembly-utils:agb_a41ac9e
$ singularity pull shub://TomHarrop/assembly-utils:agb_a41ac9e
Singularity Recipe
Bootstrap: shub
From: TomHarrop/assembly-utils:quast_5.0.2
%help
Assembly Genome Browser (AGB)
https://almiheenko.github.io/AGB
%labels
MAINTAINER "Tom Harrop"
VERSION "AGB a41ac9e"
%post
# faster apt downloads, will it break?
export DEBIAN_FRONTEND=noninteractive
(
. /etc/os-release
cat << _EOF_ > mirror.txt
deb mirror://mirrors.ubuntu.com/mirrors.txt ${UBUNTU_CODENAME} main restricted universe multiverse
deb mirror://mirrors.ubuntu.com/mirrors.txt ${UBUNTU_CODENAME}-updates main restricted universe multiverse
deb mirror://mirrors.ubuntu.com/mirrors.txt ${UBUNTU_CODENAME}-backports main restricted universe multiverse
deb mirror://mirrors.ubuntu.com/mirrors.txt ${UBUNTU_CODENAME}-security main restricted universe multiverse
_EOF_
mv /etc/apt/sources.list /etc/apt/sources.list.bak
cat mirror.txt /etc/apt/sources.list.bak > /etc/apt/sources.list
)
apt-get update
apt-get install -y \
cython3 \
git \
python3-gfapy \
python3-networkx \
python3-pip
# python3 dependencies
/usr/bin/pip3 install \
git+git://github.com/networkx/networkx-metis@34398b7
# agb
/usr/bin/pip3 install \
git+git://github.com/almiheenko/AGB.git@a41ac9e
%runscript
exec /usr/local/bin/agb.py "$@"
Collection
- Name: TomHarrop/assembly-utils
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/TomHarrop-assembly-utils-agb_a41ac9e |
collection name | TomHarrop/assembly-utils |
branch | master |
tag | agb_a41ac9e |
commit | 5b93de9aed49e774b2c74c05717b06a4aed40f26 |
version (container hash) | bef51300ada63f4fc887cd27145a646378f19151d6c729141823c6fb5304c24e |
build date | 2020-01-06T23:27:32.600Z |
size (MB) | 1181.85546875 |
size (bytes) | 1239265280 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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