TomHarrop/assemblers:trinity_2.9.1-patched
$ singularity pull shub://TomHarrop/assemblers:trinity_2.9.1-patched
Singularity Recipe
Bootstrap: docker
From: trinityrnaseq/trinityrnaseq:2.9.1
%help
Container for Trinity 2.9.1
https://github.com/trinityrnaseq/trinityrnaseq
%labels
VERSION "Trinity 2.9.1"
%environment
export PATH="${PATH}:/usr/local/bin/trinityrnaseq:/usr/local/bin/trinityrnaseq/util:/usr/local/bin/trinityrnaseq/util/support_scripts:/usr/local/bin/trinityrnaseq/util/misc"
%post
# replace Node_alignment.py with the patched version
cd /usr/local/bin/trinityrnaseq/Analysis/SuperTranscripts/pylib || exit 1
rm -f Node_alignment.py
wget https://raw.githubusercontent.com/trinityrnaseq/trinityrnaseq/1a471bda7cd025090c151c7a01c145acbdf179c6/Analysis/SuperTranscripts/pylib/Node_alignment.py
chmod 755 Node_alignment.py
%runscript
exec /usr/local/bin/trinityrnaseq/Trinity "$@"
Collection
- Name: TomHarrop/assemblers
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/TomHarrop-assemblers-trinity_2.9.1-patched |
collection name | TomHarrop/assemblers |
branch | master |
tag | trinity_2.9.1-patched |
commit | 6e1c59fe856c8ac0355bb540f8adbd7852a02866 |
version (container hash) | 5fa33d5d7ba95383d1eb537262f1c0b43f19b3fa8d5efa139b12501cf44b7029 |
build date | 2021-01-03T22:47:27.670Z |
size (MB) | 2367.6484375 |
size (bytes) | 2482659328 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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