TomHarrop/assemblers:trinity_2.9.1-patched

$ singularity pull shub://TomHarrop/assemblers:trinity_2.9.1-patched

Singularity Recipe

Bootstrap: docker
From: trinityrnaseq/trinityrnaseq:2.9.1

%help
    Container for Trinity 2.9.1 
    https://github.com/trinityrnaseq/trinityrnaseq


%labels
    VERSION "Trinity 2.9.1"

%environment
    export PATH="${PATH}:/usr/local/bin/trinityrnaseq:/usr/local/bin/trinityrnaseq/util:/usr/local/bin/trinityrnaseq/util/support_scripts:/usr/local/bin/trinityrnaseq/util/misc"

%post
    # replace Node_alignment.py with the patched version 
    cd /usr/local/bin/trinityrnaseq/Analysis/SuperTranscripts/pylib || exit 1
    rm -f Node_alignment.py
    wget https://raw.githubusercontent.com/trinityrnaseq/trinityrnaseq/1a471bda7cd025090c151c7a01c145acbdf179c6/Analysis/SuperTranscripts/pylib/Node_alignment.py
    chmod 755 Node_alignment.py

%runscript
    exec /usr/local/bin/trinityrnaseq/Trinity "$@"

Collection


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Metrics

key value
id /containers/TomHarrop-assemblers-trinity_2.9.1-patched
collection name TomHarrop/assemblers
branch master
tag trinity_2.9.1-patched
commit 6e1c59fe856c8ac0355bb540f8adbd7852a02866
version (container hash) 5fa33d5d7ba95383d1eb537262f1c0b43f19b3fa8d5efa139b12501cf44b7029
build date 2021-01-03T22:47:27.670Z
size (MB) 2367.6484375
size (bytes) 2482659328
SIF Download URL (please use pull with shub://)
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