TomHarrop/assemblers:trinity_2.9.0-patched
$ singularity pull shub://TomHarrop/assemblers:trinity_2.9.0-patched
Singularity Recipe
Bootstrap: docker
From: trinityrnaseq/trinityrnaseq:2.9.0
%help
Container for Trinity 2.9.0 (patched)
https://github.com/trinityrnaseq/trinityrnaseq/issues/782#issuecomment-577207574
https://github.com/trinityrnaseq/trinityrnaseq
%labels
VERSION "Trinity 2.9.0-patched"
%post
# replace Node_alignment.py with the patched version
cd /usr/local/bin/trinityrnaseq/Analysis/SuperTranscripts/pylib || exit 1
rm -f Node_alignment.py
wget https://raw.githubusercontent.com/trinityrnaseq/trinityrnaseq/devel/Analysis/SuperTranscripts/pylib/Node_alignment.py
chmod 755 Node_alignment.py
%runscript
exec /usr/local/bin/trinityrnaseq/Trinity "$@"
Collection
- Name: TomHarrop/assemblers
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/TomHarrop-assemblers-trinity_2.9.0-patched |
collection name | TomHarrop/assemblers |
branch | master |
tag | trinity_2.9.0-patched |
commit | 470b5c7c18c8d6a157377e40ef308ec37d415a8e |
version (container hash) | 1e0dc8ca5e7a0af8ae78b16d5e0448f25046cbae7c4931a21f20b6534cb2d99a |
build date | 2020-01-22T23:15:05.529Z |
size (MB) | 3165.6796875 |
size (bytes) | 3319455744 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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