TomHarrop/assemblers:trinity_2.9.0-patched

$ singularity pull shub://TomHarrop/assemblers:trinity_2.9.0-patched

Singularity Recipe

Bootstrap: docker
From: trinityrnaseq/trinityrnaseq:2.9.0

%help
    Container for Trinity 2.9.0 (patched)
    https://github.com/trinityrnaseq/trinityrnaseq/issues/782#issuecomment-577207574
    https://github.com/trinityrnaseq/trinityrnaseq


%labels
    VERSION "Trinity 2.9.0-patched"

%post    
    # replace Node_alignment.py with the patched version 
    cd /usr/local/bin/trinityrnaseq/Analysis/SuperTranscripts/pylib || exit 1
    rm -f Node_alignment.py
    wget https://raw.githubusercontent.com/trinityrnaseq/trinityrnaseq/devel/Analysis/SuperTranscripts/pylib/Node_alignment.py
    chmod 755 Node_alignment.py

%runscript
    exec /usr/local/bin/trinityrnaseq/Trinity "$@"

Collection


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Metrics

key value
id /containers/TomHarrop-assemblers-trinity_2.9.0-patched
collection name TomHarrop/assemblers
branch master
tag trinity_2.9.0-patched
commit 470b5c7c18c8d6a157377e40ef308ec37d415a8e
version (container hash) 1e0dc8ca5e7a0af8ae78b16d5e0448f25046cbae7c4931a21f20b6534cb2d99a
build date 2020-01-22T23:15:05.529Z
size (MB) 3165.6796875
size (bytes) 3319455744
SIF Download URL (please use pull with shub://)
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