TomHarrop/assemblers:trinity_2.11.0

$ singularity pull shub://TomHarrop/assemblers:trinity_2.11.0

Singularity Recipe

Bootstrap: docker
From: trinityrnaseq/trinityrnaseq:2.11.0

%help
    Container for Trinity 2.11.0
    https://github.com/trinityrnaseq/trinityrnaseq


%labels
    VERSION "Trinity 2.11.0"

%environment
    export PATH="${PATH}:/usr/local/bin/trinityrnaseq:/usr/local/bin/trinityrnaseq/util:/usr/local/bin/trinityrnaseq/util/support_scripts:/usr/local/bin/trinityrnaseq/util/misc"

%post
    # replace Node_alignment.py with the patched version 
    # cd /usr/local/bin/trinityrnaseq/Analysis/SuperTranscripts/pylib || exit 1
    # rm -f Node_alignment.py
    # wget https://raw.githubusercontent.com/trinityrnaseq/trinityrnaseq/1a471bda7cd025090c151c7a01c145acbdf179c6/Analysis/SuperTranscripts/pylib/Node_alignment.py
    # chmod 755 Node_alignment.py

%runscript
    exec /usr/local/bin/trinityrnaseq/Trinity "$@"

Collection


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Metrics

key value
id /containers/TomHarrop-assemblers-trinity_2.11.0
collection name TomHarrop/assemblers
branch master
tag trinity_2.11.0
commit 30eb3fcb686473e1768edcaa7b653ef174d6da86
version (container hash) 2dedef370260ece15edec3221e0cd6f9e28b9c6d4502fb0bf9931962d9c09dba
build date 2020-11-09T20:57:20.241Z
size (MB) 2415.1171875
size (bytes) 2532433920
SIF Download URL (please use pull with shub://)
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