TomHarrop/assemblers:flye_2.6-g47548b8

$ singularity pull shub://TomHarrop/assemblers:flye_2.6-g47548b8

Singularity Recipe

Bootstrap: docker
From: ubuntu:18.10

%help
    Flye 2.6-g47548b8
    https://github.com/fenderglass/Flye

%labels
    MAINTAINER "Tom Harrop"
    VERSION "Flye 2.6-g47548b8"

%post

    # deps
    apt-get clean
    apt-get update
    apt-get install -y \
        build-essential \
        git \
        python3 \
        python3-setuptools \
        wget \
        zlib1g-dev

    # install flye from release
    # mkdir Flye
    # wget -O "Flye.tar.gz" \
    #     --no-check-certificate \
    #     https://github.com/fenderglass/Flye/archive/2.6.tar.gz
    # tar -zxf Flye.tar.gz \
    #     -C Flye \
    #     --strip-components 1
    # cd Flye || exit 1

    # install Flye from git branch
    git clone https://github.com/fenderglass/Flye
    cd Flye || exit 1
    git checkout -f 47548b8
    git submodule update --init --recursive

    # build and install flye
    make

    # python3 setup.py install
    # cd .. || exit 1
    # rm -r Flye.tar.gz Flye

%environment
    export LC_ALL="C"
    export PATH="${PATH}:/Flye/bin"

%runscript
    exec /Flye/bin/flye "$@"

Collection

• Name: TomHarrop/assemblers
• License: None

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