TomHarrop/align-utils:star_2.7.3a

$ singularity pull shub://TomHarrop/align-utils:star_2.7.3a

Singularity Recipe

Bootstrap: docker
From: ubuntu:20.04

%help

    Container for STAR 2.7.3a
    https://github.com/alexdobin/STAR/releases

%labels

    MAINTAINER "Tom Harrop (twharrop@gmail.com)"
    VERSION "STAR 2.7.3a"

%runscript

    exec /usr/local/bin/STAR "$@"

%post
    # faster apt downloads
    export DEBIAN_FRONTEND=noninteractive
    (
        . /etc/os-release
        cat << _EOF_ > mirror.txt
deb mirror://mirrors.ubuntu.com/mirrors.txt ${UBUNTU_CODENAME} main restricted universe>
deb mirror://mirrors.ubuntu.com/mirrors.txt ${UBUNTU_CODENAME}-updates main restricted >
deb mirror://mirrors.ubuntu.com/mirrors.txt ${UBUNTU_CODENAME}-backports main restricte>
deb mirror://mirrors.ubuntu.com/mirrors.txt ${UBUNTU_CODENAME}-security main restricted>

_EOF_
        mv /etc/apt/sources.list /etc/apt/sources.list.bak
        cat mirror.txt /etc/apt/sources.list.bak > /etc/apt/sources.list
    )

    apt-get update
    apt-get install -y \
        build-essential \
        wget \
        zlib1g-dev

    # install STAR
    wget -O "star.tar.gz" \
        --no-check-certificate \
        https://github.com/alexdobin/STAR/archive/2.7.3a.tar.gz
    mkdir star
    tar -zxf star.tar.gz \
        -C star \
        --strip-components 1
    cd star/source || exit 1
    make
    cp STAR /usr/local/bin
    cd ../../ || exit 1
    rm -rf star.tar.gz star

Collection


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Metrics

key value
id /containers/TomHarrop-align-utils-star_2.7.3a
collection name TomHarrop/align-utils
branch master
tag star_2.7.3a
commit 729b6018f27cdc5dde533fabc431b834bbb2bc52
version (container hash) e78f03a9c3f8d7deb74dc78c06a66cc5fdbea32eac4792885165b4df90bc1488
build date 2020-05-06T22:08:28.842Z
size (MB) 111.02734375
size (bytes) 116420608
SIF Download URL (please use pull with shub://)
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