TomHarrop/align-utils:muscle_3.8.1551

$ singularity pull shub://TomHarrop/align-utils:muscle_3.8.1551

Singularity Recipe

Bootstrap: docker
From: ubuntu:19.10

%help
    MUSCLE 3.8.1551
    http://www.drive5.com/muscle/downloads.htm
    

%labels
    MAINTAINER "Tom Harrop"
    VERSION "MUSCLE 3.8.1551"

%post
    # faster apt downloads, will it break?
    export DEBIAN_FRONTEND=noninteractive
    (
        . /etc/os-release
        cat << _EOF_ > mirror.txt
deb mirror://mirrors.ubuntu.com/mirrors.txt ${UBUNTU_CODENAME} main restricted universe multiverse
deb mirror://mirrors.ubuntu.com/mirrors.txt ${UBUNTU_CODENAME}-updates main restricted universe multiverse
deb mirror://mirrors.ubuntu.com/mirrors.txt ${UBUNTU_CODENAME}-backports main restricted universe multiverse
deb mirror://mirrors.ubuntu.com/mirrors.txt ${UBUNTU_CODENAME}-security main restricted universe multiverse

_EOF_
        mv /etc/apt/sources.list /etc/apt/sources.list.bak
        cat mirror.txt /etc/apt/sources.list.bak > /etc/apt/sources.list
    )

    # deps
    apt-get update
    apt-get install -y \
        build-essential \
        wget

    # muscle
    wget -O muscle.tar.gz \
        http://www.drive5.com/muscle/downloads3.8.31/muscle3.8.31_src.tar.gz
    mkdir muscle
    tar -zxf muscle.tar.gz \
        -C muscle \
        --strip-components 1
    cd muscle/src || exit 1
    make
    mv muscle /usr/local/bin/
    cd ../../ || exit 1
    rm -r muscle muscle.tar.gz

%runscript
    exec /usr/local/bin/muscle "$@"

%environment
    export LC_ALL="C"

Collection

• Name: TomHarrop/align-utils
• License: None

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