TeamMango/cavatica:latest
$ singularity pull shub://TeamMango/cavatica:latest
Singularity Recipe
Bootstrap: docker
From: ubuntu
%labels
author Jennifer Chang
title Cavatica: A pipeline for identifying author adoption trends among software or methods
doi 10.1109/BIBM.2017.8217990
last-update 2018-07-26
%post
apt-get -y update
apt-get install -y git
git clone https://github.com/TeamMango/cavatica.git
chmod -R go+rw /cavatica/
DEBIAN_FRONTEND=noninteractive apt-get install -y r-base
echo "install.packages(\"ggplot2\", repos=\"https://cran.rstudio.com\")" | R --no-save
echo "install.packages(\"readr\", repos=\"https://cran.rstudio.com\")" | R --no-save
%runscript
cd /cavatica/data/output
ln -s ../test/*.tsv .
../../code/script.sh
find /cavatica/data/output -type l | xargs rm
%environment
export PATH=/:$PATH
Collection
- Name: TeamMango/cavatica
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/TeamMango-cavatica-latest |
collection name | TeamMango/cavatica |
branch | master |
tag | latest |
commit | d74b9b3b1db5a5b3c802518d9541d982f486e2eb |
version (container hash) | e3b10270f19c624733d97c919496ffeb |
build date | 2018-07-26T20:24:37.662Z |
size (MB) | 1182 |
size (bytes) | 556167199 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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